26-27 Oct 2023 Strasbourg (France)

Outlines

 

 

 

  • High-pressure research of molecular crystals and characterization of non-covalent interactions

Pr Dr Elena Boldyreva, Novosibirsk State University,  Russia

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High-pressure diffraction studies can provide valuable information on various intermolecular interactions in crystals, in particular, on their relative importance for the formation of crystal structures and the response of a crystal structure to external (hydrostatic) and internal (chemical) pressure. Different types of interactions may be important in different pressure ranges. The following topics will be discussed:

  • Anisotropy of structural strain – what can it teach about intermolecular interactions?
  • Low-temperature and high-pressure polymorphs – why they can differ?
  • High-pressure polymorphism and the role of pressure-transmitting media
  • The concept of reaction chemistry, chemical pressure and high-pressure studies

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  1. E.V. Boldyreva, High Pressure Crystallography: Elucidating the Role of Intermolecular Interactions in Crystals of Organic and Coordination Compounds, In: Understanding Intermolecular Interactions in the Solid State: Approaches and Techniques (Ed. D. Chopra), Royal Society of Chemistry, 2018, 32-97; DOI: 10.1039/9781788013086-00032
  2. B.A. Zakharov, E.V. Boldyreva, High Pressure: A Complementary Tool for Probing Solid-State Processes, CrystEngComm. 21 (2019) 10-22. DOI: 10.1039/c8ce01391h
  3. E.V. Boldyreva, Lab in a DAC – High-Pressure Crystallography as a Powerful Tool to Study Chemical Interactions and Chemical Reactions, Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 75 (2019), 916-917. DOI: 10.1107/s2052520619015889
  4. B.A. Zakharov, Z. Gal, D. Cruickshank, E.V. Boldyreva, Studying Weak Interactions in Crystals at High Pressures: When Hardware Matters, Acta Crystallographica Section E. 74 (2018), 613-619. DOI: 10.1107/s205698901800470x
  5. G. Resnati, E.V. Boldyreva, P. Bombicz & M. Kawano, Supramolecular interactions in the solid state. IUCrJ, 2 (2015), 675-690. DOI: 10.1107/S2052252515014608
  6. J. S. Tse & E.V. Boldyreva. Electron density topology of crystalline solids at high pressure. Modern Charge-Density Analysis (2011), 573-623, Springer. https://link.springer.com/chapter/10.1007/978-90-481-3836-4_17
  7. E. Boldyreva & P. Dera (Eds.). High-pressure crystallography: from fundamental phenomena to technological applications (2010). Springer Science & Business Media.
  8. E.V. Boldyreva, E. V. High-pressure diffraction studies of molecular organic solids. A personal view. Acta Crystallographica Section A: Foundations of Crystallography, 64 (2008), 218-231. DOI: 10.1107/S0108767307065786
  9. E.V. Boldyreva, E. High-pressure polymorphs of molecular solids: when are they formed, and when are they not? Some examples of the role of kinetic control. Crystal Growth & Design, 7 (2007), 1662-1668. DOI: 10.1021/cg070098u
  10. E.V. Boldyreva, The concept of the ‘reaction cavity’: A link between solution and solid-state chemistry. Solid State Ionics, 101 (1997), 843-849. DOI: 10.1016/S0167-2738(97)00318-4

 

  • Four Experimental Systems that Test Dispersion Interactions in the Gas Phase

R. Pollice, M. Bot, V. Gorbachev, A. Tsybizova, L. Fritsche, L. Miloglyadova, Raphael Bissig, Raphael Oeschger, and Prof Dr Peter Chen, Laboratorium für Organische Chemie, ETH Zürich

ETH_BIB_Chen_Peter_1960_Portr_17433_small.jpg

 

For large molecules, meaning systems with up to 200 atoms, London dispersion effects on bond strengths and intra- or intermolecular interactions can reach tens of kcal/mol.  We report multiple experimental systems with multiple physical techniques that stress-test the computational workflow for large molecules.  The methods range from "Second Law" measurements, which essentially measure rates, to "Third Law" measurements, which measure equilibria, all in the gas phase (although there is accompanying work in solution) to be directly comparable to electronic structure calculations without intervening solvent models which themselves can become problematic.

 

 

  • Transforming methyl groups into Lewis bases with main group metals

 Pr Dr Jorge Echeverria Lopez, University of Zaragoza, Spain.

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We show here how the nucleophilic or electrophilic character of ubiquitous methyl groups can be modulated by specific substitution. When a methyl group is directly bound to an electronegative atom the electron density is attracted by the later and the electron-deficient carbon atom can behave as a Lewis acid giving place to the so-called tetrel bonding. On the other hand, if the methyl group is bound to an electropositive atom (e.g. Al) the carbon atom becomes electron-rich and can act as a Lewis base in many different types of known noncovalent interactions. This intriguing behavior has been recently reported in hydrogen bonds,[1] s- and π-hole interactions,[2] short methyl-alkali metal contacts in aluminates,[3] and also in reciprocal methyl···methyl interactions.[4]

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[1] O. Loveday, J. Echeverría; Cryst. Growth Des., 2021, 21, 5961.

[2] O. Loveday, J. Echeverría; Nature Commun., 2021, 12, 5030.

[3] J. Damián, C. Rentero, J. Echeverría, M.E.G. Mosquera; Faraday Discuss., 2023 DOI: 10.1039/D2FD00144F

[4] N. Keshtkar, O. Loveday, V. Polo, J. Echeverría; Cryst. Growth Des., 2023, 23, 5112.

 

  • The Independent Gradient Model

Pr. Dr Eric Hénon, Université de Reims, France

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The Independent Gradient Model (IGM) is a relatively recent electron density-based approach, which has its roots in the Noncovalent Interaction (NCI) approach pioneered by W. Yang.[1] Building upon the foundations of NCI, the IGM offers a novel perspective in the study of non-covalent interactions by utilizing the electron density gradient to identify and quantify these interactions through the concept of ED contragradience.[2] The IGM approach introduces unique local descriptors and methodologies, which provide a new framework for quantifying and deepening the understanding of interactions over a broad range, spanning from strong covalent bonds to subtle weak interactions, through metal coordination.[3],[4] It offers atomic-level information[5],[6] and provides chemists with a visual understanding of the interactions present in chemical systems.[7] This computational tool[8]has potential applications in the interpretation of chemical reaction mechanisms and in exploring the realm of host-guest chemistry.



[1] E. R. Johnson, S. Keinan, P. Mori-Sanchez, J. Contreras-Garcia, Julia and A. J. Cohen and W. Yang, J. Am. Chem. Soc. 132 (2010) 6498.

[2] C. Lefebvre, Corentin, G. Rubez, H. Khartabil, J.-C. Boisson, J. Contreras-Garcia and E. Hénon, Phys. Chem. Chem. Phys. 19 (2017) 17928.

[3] C. Lefebvre, H. Khartabil, J.-C. Boisson, J. Contreras-Garcia, J.-P. Piquemal and E. Hénon, Chem. Phys. Chem. 19 (2018) 724.

[4] J. Klein, H. Khartabil, J.-C. Boisson, J. Contreras-Garcia, J.-P. Piquemal and E. Hénon, J. Phys. Chem. A 124 (2020) 1850.

[5] M. Ponce-Vargas, C. Lefebvre, J.-C. Boisson and E. Hénon, J. Chem. Inf. Model. 60 (2020) 268.

[6] C. Lefebvre, H. Khartabil and E. Hénon, Phys. Chem. Chem. Phys. 25 (2023) 11398.

[7] R. Weiss, Y. Cornaton, H. Khartabil, L. Groslambert, E. Hénon, P. Pale, J.-P. Djukic and V. Mamane, ChemPlusChem 87 (2022) e202100518.

[8] C. Lefebvre, J. Klein, H. Khartabil, J.-C. Boisson and E. Hénon, J. Comp. Chem. (2023), just accepted https://doi.org/10.1002/jcc.27123

 

 

  • The delicate balance of non-covalent interactions in protic ionic liquids: The specific role of hydrogen bonding and dispersion interaction.
Pr Dr Ralf Ludwig, University of Rostock, Germany
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The properties of ionic liquids rely on a delicate balance of Coulomb interactions, hydrogen bonds and dispersion forces. Separating and quantifying these interaction contributions in such complex liquids remains a challenge. We show that specific protic ionic liquids, far-infrared spectra, evaporation enthalpies as well as DFT calculations allow the analysis of the non-covalent interaction energies and a quantification of the differently localized, strong and directional interaction contributions in ionic liquids.[1-7] Special attention we pay to the competition between hydrogen bonds and dispersion interactions and the role of both types of interactions in the case of repulsive or attractive Coulomb interaction between ions of like or opposite charge.[5,8]

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[1]    K. Fumino, E. Reichert, K. Wittler, R. Hempelmann, R. Ludwig, Angew. Chem. Int. Ed. 2012, 51, 6236.
[2]    K. Fumino, V. Fossog, K. Wittler, R. Hempelmann, R. Ludwig, Angew. Chem. Int. Ed. 2013, 52, 2368.
[3]    K. Fumino, S. Reimann, R. Ludwig, Phys. Chem. Chem. Phys. 2014, 16, 21903.
[4]    R. Ludwig, Phys. Chem. Chem. Phys. 2015, 17, 13790.
[5]    K. Fumino, V. Fossog, P. Stange, D. Paschek, R. Hempelmann, R. Ludwig, Angew. Chem. Int. Ed. 2015, 54, 2792.
[6]    D. H. Zaitsau, V. N. Emel'yanenko, P. Stange, C. Schick, S. P. Verevkin, R. Ludwig, Angew. Chem. Int. Ed. 2016, 55, 11682.
[7]    D. H. Zaitsau, V. N. Emel'yanenko, P. Stange, S. P. Verevkin, R. Ludwig, Angew. Chem. Int. Ed. 2019, 58, 8589.
[8]    T. Niemann, D. H. Zaitsau, A. Strate, P. Stange, R. Ludwig, Phys. Chem. Chem. Phys. 2020, 22, 2763.

 

 

  • Accurate structural, energetic and spectroscopic characterization of non-covalent interactions

Pr. Dr Cristina Puzzarini, University of Bologna, Italy

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Non-covalent interactions play a key role in many different aspects of chemistry, ranging from biological and technological processes to astrochemistry. The topics that will be touch is this contribution are:

  • Accurate evaluation of the interaction energy in intermolecular complexes by means of effective computational protocols.1,2
  • Accurate characterization of the intermolecular structural parameters by means of the interplay of experiment (rotational spectroscopy) and theory.2-6
  • The crucial role of pre-reactive van-der-Waals complexes in gas-phase chemical reactions of astrochemical relevance.7-9

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  1. S. Alessandrini, V. Barone, C. Puzzarini. Extension of the “cheap” composite approach to non-covalent interactions: the jun-ChS scheme. J. Chem. Theory Comp., 16 (2020) 988.

  2. J. Lupi, S. Alessandrini, C. Puzzarini, V. Barone. junChS and junChS-F12 Models: Parameter-free Efficient yet Accurate Composite Schemes for Energies and Structures of Noncovalent Complexes. J. Chem. Theory Comput. 17 (2021) 6974.

  3. D. A. Obenchain, L. Spada, S. Alessandrini, S. Rampino, S. Herbers, N. Tasinato, M. Mendolicchio, P. Kraus, J. Gauss, C. Puzzarini, J.-U. Grabow, V. Barone. Unveiling the sulfur-sulfur bridge: accurate structural and energetic characterization of a homo chalcogen inter-molecular bond. Angew. Chem. Int. Ed. 57 (2018) 15822.

  4. J. Wang, L. Spada, J. Chen, S. Gao, S. Alessandrini, G. Feng, C. Puzzarini, Q. Gou, J.-U. Grabow, V. Barone. The unexplored world of cycloalkene-water complexes: primary and assisting interactions unraveled by experimental and computational spectroscopy. Angew. Chem. Int. Ed. 58 (2019) 13935.

  5. J. Lei, S. Alessandrini, J. Chen, Y. Zheng, L. Spada, Q. Gou, C. Puzzarini, V. Barone. Rotational Spectroscopy Meets Quantum Chemistry for Analyzing Substituent Effects on Non-Covalent Interactions: The Case of the Trifluoroacetophenone-Water Complex. Molecules 25 (2020) 4899.

  6. X. Li, L. Spada, S. Alessandrini, Y. Zheng, K.G. Lengsfeld, J.-U. Grabow, G. Feng, C. Puzzarini, V.  Barone. Stacked but not Stuck: Unveiling the Role of π®π* Interactions with the Help of the Benzofuran-Formaldehyde Complex. Angew. Chem. Int. Ed. 61 (2022) 264.

  7. V. Barone, C. Puzzarini. Toward accurate formation routes of complex organic molecules in the interstellar medium: the paradigmatic cases of acrylonitrile and cyanomethanimine. Front. Astron. Space Sci. 8 (2022) 814384 and references therein.

  8. P. Recio, S. Alessandrini, G. Vanuzzo, G. Pannacci, A. Baggioli, D. Marchione, A. Caracciolo, V.J. Murray, P. Casavecchia, N. Balucani, C. Cavallotti, C. Puzzarini, V. Barone. Intersystem-Crossing in the Entrance Channel without Heavy Atoms: the reaction of O(3P) with pyridine. Nature Chem.  14 (2022) 1405

  9. J.G. de la Concepción, C. Cavallotti, V. Barone, C. Puzzarini, I. Jiménez-Serra. Relevance of the P + O2 reaction for PO formation in astrochemical environments: electronic structure calculations and kinetic simulations. Submitted for publication (2023).

 

  • Experimental identification and quantification of dispersive and hydrophobic interactions

Prof. Dr. Hans-Jörg Schneider    FR Organische Chemie der Universität des Saarlandes, Saarbrücken, Germany

Schneider_Hans_Joerg_Nov_2014_small.jpg

The distinction between dispersive and classical or nonclassical hydrophobic interactions based on entropic or enthalpic driving forces is problematic in view of the temperature dependence of these parameters,[i] and similar contributions of TDS and DH, or also heat capacity and solvent effects.[ii] Measurements of supramolecular porphyrin complexes in water open the possibility to elucidate experimentally the contributions of these prominent van der Waals interactions.[iii] Unexpectedly, even most hydrophobic solutes such as alkanes do not associate at all with the flat porphyrin surface, which indicates that classical hydrophobic interactions at least do not exist between molecules. Enthalpically driven hydrophobic interactions between molecules occur, in line with MD simulations,[iv] only at concave sites, where the replacement of disordered water molecules with hydrogen bond deficiency by a guest molecule leads to sizeable associations depending on the number of such water molecules.[v]

The absence of hydrophobic interactions in the porphyrin complexes allows, for the first time, to derive increments of dispersion free energy in water for numerous groups, [vi],[vii] including peptides,[viii]etc. These increments are additive, as shown with 50 different complexes. The results have implications for understanding van der Waals interactions in and with biopolymers such as proteins or nucleic acids, where the availability of many polarizable groups makes dispersive interactions more likely than usually assumed hydrophobic interactions. Porphyrin complexes can be useful for evaluating dispersive interactions with bioactive compounds such as drugs.



[i] DOI 10.1016/j.chphi.2022.100104

[ii] DOI 10.1021/acs.chemrev.5b00583

[iii] DOI 10.1021/jo00103a046

[iv]  DOI 10.1021/ct1003077

[v] DOI 10.1002/anie.201310958    DOI 10.1002/anie.199114171

[vi] DOI 10.1002/1521-3773(20020415)41:8<1368::AID-ANIE1368>3.0.CO;2-N

[vii] DOI 10.1021/acs.accounts.5b00111

[viii] DOI 10.1002/1521-3765(20020301)8:5<1181::AID-CHEM1181>3.0.CO;2-U

 

  •  Development of explicit QM/MB/LR approaches for vdW interactions

Pr Dr Alexander Tkatchenko, University of Luxemburg, Luxemburg

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Noncovalent van der Waals (vdW) interactions are known to be quantum mechanical (QM), many-body (MB) and long range (LR) in nature [1,2,3]; despite this fact practical models often neglect these well-known properties of vdW interactions [4]. I will summarize our development of explicit QM/MB/LR approaches for vdW interactions based on swarms of coupled quantum Drude oscillators (QDOs) [5]. I will demonstrate the efficiency, accuracy, scalability, and transferability of QDO models for a wide range of chemical, biological, and condensed matter systems at nano, meso, and macroscopic scales. Furthermore, novel insights into vdW interactions in complex molecules will be demonstrated by analyzing spatial and temporal properties of coupled QDOs.
 
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[1] https://doi.org/10.1021/acs.chemrev.6b00446

[2] https://doi.org/10.1126/science.aae0509

[3] https://doi.org/10.1038/ncomms3341

[4] https://doi.org/10.1039/C9CS00060G

[5] https://doi.org/10.1021/acs.jpclett.3c01221

 

 

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